Plasmid NZ_CP086425.1

Sequence

Nucleotide Information

Accession NZ_CP086425.1
Description Klebsiella pneumoniae strain AE-2247421-T20-MAC plasmid p2247421-T20-MAC_2, complete sequence
Source refseq
Topology circular
Length 158444 bp
GC Content 0.52 %
Created at NCBI March 31, 2022



Assembly

Genome Data Information

Accession GCF_022759965.1
Assembly Coverage 238


Biosample

Curated Collection Information
Accession 22108734

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland
Original Query Type name
Coordinates (Lat/Lon) 46.80/8.23
Address Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderplussilFcopy
amrfinderplussilRcopy
amrfinderplussilBcopy
amrfinderplussilAcopy
amrfinderplussilCcopy
amrfinderplusarsAcopy
amrfinderplussilScopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 178 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T102066104375minus97.79210001436
mate-pair-formationNC_019155_00032MPF_F106195109038minus99.8959901853
mate-pair-formationNC_019165_00034MPF_F109041110408minus99.7811000842
mate-pair-formationNC_021654_00016MPF_F113208115211minus10010001292
mate-pair-formationNC_019389_00080MPF_F115211115846minus96.6981003.2499999999999997e-135424
mate-pair-formationNC_022609_00081MPF_F115862116851minus95.7581000666
mate-pair-formationNC_014312_00128MPF_F116871117488minus98.544985.2e-121384
mate-pair-formationNC_021502_00131MPF_T117880120516minus96.24610001758
mate-pair-formationNC_021654_00004MPF_F123153123719minus1001002.62e-122386
mate-pair-formationNC_023332_00154MPF_F124334125755minus99.5781000789
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2