Plasmid NZ_CP086417.1
Sequence
Nucleotide Information
| Accession | NZ_CP086417.1 |
|---|---|
| Description | Klebsiella pneumoniae strain AE-2247421-T20-ESBL plasmid p2247421-T20-ESBL_1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 156512 bp |
| GC Content | 0.53 % |
| Created at NCBI | March 31, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22108735 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens,stool |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_CP086432.1
- Description: Klebsiella pneumoniae strain AE-2247421-T5-ESBL plasmid p2247421-T5-ESBL_1, complete sequence
- Source: refseq
- Created at NCBI: March 31, 2022
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 22108733 - GEOGRAPHICAL INFORMATION
- Original Query: Switzerland
- Original Query Type: name
- Address: Switzerland
- Coordinates (Lat/Lon): 46.80/8.23
- ECOSYSTEM
- Original Query: Homo sapiens,stool
- Classification: fecal,gastrointestinal_system,host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | merT | copy | ||
| amrfinderplus | merC | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | aph(6)-Id | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | arr-2 | copy | ||
| amrfinderplus | blaCMY-16 | copy | ||
| amrfinderplus | floR | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 200 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_009140_00071 | MPF_F | 48240 | 50102 | plus | 100 | 100 | 0 | 1177 |
| mate-pair-formation | NC_014170_00023 | MPF_F | 54525 | 55439 | plus | 92.131 | 100 | 0 | 569 |
| mate-pair-formation | NC_012885_00083 | MPF_F | 55439 | 56752 | plus | 90.411 | 100 | 0 | 752 |
| mate-pair-formation | NC_016974_00085 | MPF_F | 56752 | 57327 | plus | 99.479 | 100 | 1.07e-114 | 365 |
| mate-pair-formation | NC_012885_00088 | MPF_T | 68750 | 71194 | plus | 98.16 | 100 | 0 | 1640 |
| mate-pair-formation | NC_012885_00091 | MPF_F | 72019 | 73281 | plus | 94.076 | 100 | 0 | 821 |
| mate-pair-formation | NC_023291_00077 | MPF_F | 73949 | 74953 | plus | 99.403 | 100 | 0 | 582 |
| mate-pair-formation | NC_012885_00167 | MPF_F | 145276 | 146706 | plus | 97.484 | 100 | 0 | 931 |
| oriT | JQ319772 | MOBH | 155299 | 155696 | plus | 100 | 100 | 0 | 736 |
| replicon | 000092__CP025470 | IncC | 1 | 1101 | plus | 100 | 100 | 0 | 2034 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |