Plasmid NZ_CP085762.1

Sequence

Nucleotide Information

Accession	NZ_CP085762.1
Description	Enterobacter hormaechei strain 54569CZ plasmid p54569CZ_IncQ1, complete sequence
Source	refseq
Topology	circular
Length	9402 bp
GC Content	0.57 %
Created at NCBI	Nov. 3, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterobacter hormaechei (158836)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Enterobacter (547)
Species	Enterobacter_hormaechei (158836)
Strain

Assembly

Genome Data Information

Accession	GCF_020695605.1
Assembly Coverage	247

Biosample

Curated Collection Information

Accession	22377422

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	50.21N;15.82E
Original Query Type	coordinates
Coordinates (Lat/Lon)	50.21/15.82
Address	805/39, Střelecká, Střelecká-západ, Hradec Králové, okres Hradec Králové, Královéhradecký kraj, Northeast, 500 02, Czechia

ECOSYSTEM

Original Query	Homo sapiens,wound abdomin
Classification	abdominal,host_associated,wound
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	bile duct perforation
DOID/SYMP	Perforation bile duct (DOID:13409 ) None

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP085762.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	aph(3')-VIa		copy
PGAG	APH(3')-VI family aminoglycoside O-phosphotransferase		copy
PGAG	mobilization protein C		copy
PGAG	IncQ-type mobilization protein MobB		copy
PGAG	DNA-primase RepB domain-containing protein		copy
PGAG	hypothetical protein		copy
PGAG	urfF		copy
PGAG	helicase RepA family protein		copy
PGAG	repC		copy
PGAG	Tn3 family transposase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 14 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000192__AM183225_00009	IncQ1	4739	5561	plus	100	96	0	1520
oriT	CP016527	MOBQ	1837	1993	plus	100	100	2.28e-76	291
relaxase	CP022499	MOBQ	2082	4208	plus	100	100	0	1316
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2