Plasmid NZ_CP085756.1
Sequence
Nucleotide Information
| Accession | NZ_CP085756.1 |
|---|---|
| Description | Enterobacter hormaechei strain 57816CZ plasmid p57816CZ_VIM, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 55220 bp |
| GC Content | 0.49 % |
| Created at NCBI | Nov. 3, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (158836) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22377429 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 48.97N;14.48E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 48.97/14.48 |
| Address | 285/1, Vrchlického nábř., Havlíčkova kolonie, České Budějovice 6, České Budějovice, okres České Budějovice, Southwest, 370 01, Czechia |
ECOSYSTEM
| Original Query | Homo sapiens,urine - permanent urinary catheter |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
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G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | aac(6')-Ib' | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | blaVIM-1 | copy | ||
| rgi | aadA2 | copy | ||
| rgi | AAC(6')-Ib9 | copy | ||
| amrfinderplus | merT | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 73 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000687__KX348146_00033 | rep_cluster_1367 | 30419 | 31312 | plus | 99.553 | 100 | 0 | 1629 |
| relaxase | CP008826_00025 | MOBC | 2 | 538 | plus | 98.883 | 99 | 2.34e-116 | 372 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |