Plasmid NZ_CP084732.1

Sequence

Nucleotide Information

Accession NZ_CP084732.1
Description Acinetobacter baumannii strain HKU4 plasmid pHKU4b, complete sequence
Source refseq
Topology circular
Length 69524 bp
GC Content 0.33 %
Created at NCBI Oct. 19, 2021



Assembly

Genome Data Information

Accession GCF_020520345.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 22202743

PLASMID INFORMATION
Genotype ST195

GEOGRAPHICAL INFORMATION
Original Query 22.270228N;114.130868E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.27/114.13
Address Main Block, Pok Fu Lam Road, Telegraph Bay, Pok Fu Lam, Southern District, Hong Kong Island, Hong Kong, China

ECOSYSTEM
Original Query Homo sapiens,hospital
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Acinetobacter colonization
DOID/SYMP
  • Acinetobacter infectious disease (DOID:3091 )
    • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
    • Has_material_basis_in: ['acinetobacter']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP137076.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
NZ_CP137076.1 See Comparison
CP002524.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
NZ_CP084732.1 See Comparison
CP002524.1 See Comparison
NZ_CP137076.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
CP002524.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_MG954379.1 See Comparison
CP002524.1 See Comparison
NZ_CP137076.1 See Comparison
CP002524.1 See Comparison
NZ_CP137076.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
CP002524.1 See Comparison
NZ_CP137076.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison
NZ_MG954379.1 See Comparison
NZ_CP115627.1 See Comparison
NZ_CP115624.1 See Comparison
NZ_CP137076.1 See Comparison
CP002524.1 See Comparison
NZ_CP084726.1 See Comparison
NZ_CP084723.1 See Comparison
NZ_CP084729.1 See Comparison
NZ_CP084735.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2