Plasmid NZ_CP084210.1

Sequence

Nucleotide Information

Accession NZ_CP084210.1
Description Escherichia coli strain EC2648-R2 plasmid pKP2648-34R, complete sequence
Source refseq
Topology circular
Length 38567 bp
GC Content 0.50 %
Created at NCBI June 8, 2022



Assembly

Genome Data Information

Accession GCF_023653905.1
Assembly Coverage 364


Biosample

Curated Collection Information
Accession 21839407

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query cell culture,conjugation assay
Classification cell_culture
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGTrfB-related DNA-binding proteincopy
PGAGsingle-stranded DNA-binding proteincopy
PGAGDUF932 domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGDUF192 domain-containing proteincopy
PGAGreplication protein RepAcopy
PGAGrecombinase family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 59 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_020122_00006MPF_T1497617603plus97.60310001761
mate-pair-formationNC_020122_00009MPF_T1858219622plus1001000570
mate-pair-formationNC_020122_00011MPF_T1989320606plus1001001.44e-159496
mate-pair-formationNC_020122_00012MPF_T2061221496plus1001000603
mate-pair-formationNC_020122_00019MPF_T3204633620minus10010001045
replicon000150__JQ996149IncN66107497minus10010001640
relaxaseNC_020122_00018MOBF2917932040minus1009901877
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2