Plasmid NZ_CP084181.1

Sequence

Nucleotide Information

Accession NZ_CP084181.1
Description Enterococcus faecium strain 4995/20 plasmid p4995_3, complete sequence
Source refseq
Topology circular
Length 39491 bp
GC Content 0.36 %
Created at NCBI Oct. 6, 2021



Assembly

Genome Data Information

Accession GCF_020221735.2
Assembly Coverage 670


Biosample

Curated Collection Information
Accession 21850488

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.1234N;18.0084E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.12/18.01
Address Rondo Jagiellonów, Jagiellońska, Gdańskie Przedmieście, Śródmieście, Śródmieście-Bocianowo-Stare Miasto, Bydgoszcz, Kuyavian-Pomeranian Voivodeship, 85-316, Poland

ECOSYSTEM
Original Query Homo sapiens,hematoma
Classification host_associated,skin
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 35
Host-associated Sex male

DISEASE
Original Query wound infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP084181.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore