Plasmid NZ_CP083710.1

Sequence

Nucleotide Information

Accession NZ_CP083710.1
Description Enterobacter cloacae complex sp. ECL352 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 165418 bp
GC Content 0.52 %
Created at NCBI Sept. 29, 2021



Assembly

Genome Data Information

Accession GCF_020149545.1
Assembly Coverage 550


Biosample

Curated Collection Information
Accession 21399027

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Yongchuan District,Chongqing
Original Query Type name
Coordinates (Lat/Lon) 29.46/105.98
Address China,Yongchuan District,Chongqing

ECOSYSTEM
Original Query Homo sapiens,pure culture,sputum
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP083710.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussilScopy
amrfinderpluspcoBcopy
amrfinderpluspcoScopy
amrfinderpluspcoDcopy
amrfinderpluspcoRcopy
amrfinderplusmerTcopy
amrfinderplusmerEcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderplussilFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 154 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP019890_00139IncFII4736848273plus81.7181000754
repliconCP039454_00078IncFIB8184882858minus94.85710001580
repliconCP001919IncFII104693105310plus93.0421000904
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2