Plasmid NZ_CP083071.1

Sequence

Nucleotide Information

Accession NZ_CP083071.1
Description Klebsiella pneumoniae strain 1230_0791_KP plasmid p1-1230_0791_KP, complete sequence
Source refseq
Topology circular
Length 202875 bp
GC Content 0.44 %
Created at NCBI Dec. 11, 2021



Assembly

Genome Data Information

Accession GCF_021138035.1
Assembly Coverage 420.61


Biosample

Curated Collection Information
Accession 21016479

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.9321N;7.4199E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.93/7.42
Address Labor Dr. Risch, Kohlenweg, Liebefeld, Köniz, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3097, Switzerland

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP083071.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(3)-Ib/AAC(6')-Ib3 bifunctional proteincopy
amrfinderplusterCcopy
amrfinderplusterEcopy
amrfinderplusterDcopy
amrfinderplusterBcopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 216 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_016980_00240MPF_F4276844891minus10010001480
mate-pair-formationNC_018107_00101MPF_F5308454523plus96.251000923
mate-pair-formationNC_016980_00110MPF_F134674135708minus1001000719
mate-pair-formationNC_016980_00109MPF_F135708137066minus99.7791000937
mate-pair-formationNC_016980_00099MPF_T146543149257minus99.77910001844
mate-pair-formationNC_018107_00235MPF_F153215154381minus93.3161000709
mate-pair-formationNC_023911_00309MPF_F154386155243minus92.3081003.73e-172534
relaxaseNC_016980_00239MOBH4488447829minus98.77810001919
repliconCP024497_00001IncFIB11089plus92.84410001580
repliconJN420336IncHI1B109770110339minus99.47410001037
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2