Plasmid NZ_CP083048.1
Sequence
Nucleotide Information
| Accession | NZ_CP083048.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 400195-1-18 plasmid p1-400195-1-18, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 254008 bp |
| GC Content | 0.46 % |
| Created at NCBI | Dec. 11, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 21016517 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 47.560972N;7.585161E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 47.56/7.59 |
| Address | Universitätsspital Basel, 21, Spitalstrasse, Vorstädte, Grossbasel, Basel, Basel-City, 4031, Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP083044.1
- Description: Klebsiella pneumoniae strain 400195-2-18 plasmid p1-400195-2-18, complete sequence
- Source: refseq
- Created at NCBI: Dec. 11, 2021
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 21016518 - GEOGRAPHICAL INFORMATION
- Original Query: 47.560972N;7.585161E
- Original Query Type: coordinates
- Address: Universitätsspital Basel, 21, Spitalstrasse, Vorstädte, Grossbasel, Basel, Basel-City, 4031, Switzerland
- Coordinates (Lat/Lon): 47.56/7.59
- ECOSYSTEM
- Original Query: Homo sapiens
- Classification: host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | aadA2 | copy | ||
| rgi | msrE | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| rgi | mphE | copy | ||
| rgi | aadA2 | copy | ||
| amrfinderplus | mph(E) | copy | ||
| rgi | AAC(3)-Ib/AAC(6')-Ib3 bifunctional protein | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | merE | copy | ||
| amrfinderplus | merT | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 270 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP024497_00001 | IncFIB | 1 | 1089 | plus | 92.752 | 100 | 0 | 1574 |
| replicon | 000562__KT346360_00001 | rep_cluster_1254 | 129171 | 129925 | plus | 90.464 | 81 | 0 | 996 |
| replicon | JN420336 | IncHI1B | 152133 | 152702 | minus | 100 | 100 | 0 | 1053 |
| relaxase | NC_016980_00239 | MOBH | 49687 | 52632 | minus | 100 | 100 | 0 | 1949 |
| mate-pair-formation | NC_016980_00240 | MPF_F | 47571 | 49694 | minus | 100 | 100 | 0 | 1480 |
| mate-pair-formation | NC_018107_00101 | MPF_F | 57887 | 59326 | plus | 96.25 | 100 | 0 | 923 |
| mate-pair-formation | NC_016980_00110 | MPF_F | 185026 | 186060 | minus | 100 | 100 | 0 | 718 |
| mate-pair-formation | NC_016980_00109 | MPF_F | 186060 | 187418 | minus | 100 | 100 | 0 | 939 |
| mate-pair-formation | NC_016980_00099 | MPF_T | 198120 | 200834 | minus | 100 | 100 | 0 | 1846 |
| mate-pair-formation | NC_018107_00235 | MPF_F | 204795 | 205961 | minus | 93.059 | 100 | 0 | 707 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |