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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP083031.1
Sequence
Nucleotide Information
Accession
NZ_CP083031.1
Description
Klebsiella pneumoniae strain 6604.68 plasmid p5-6604.68, complete sequence
Source
refseq
Topology
circular
Length
3503 bp
GC Content
0.43 %
Created at NCBI
Dec. 11, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_021137815.1
Assembly Coverage
204.287
Biosample
Curated Collection Information
Accession
21016524
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
46.947928N;7.422277E
Original Query Type
coordinates
Coordinates (Lat/Lon)
46.95/7.42
Address
Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Sepsis
DOID/SYMP
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
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Plasmids from same Biosample
NZ_CP083030.1
NZ_CP083029.1
NZ_CP083028.1
NZ_CP083027.1
Similar Plasmids
based on Mash distance
NZ_CP083031.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore