Plasmid NZ_CP083020.1

Sequence

Nucleotide Information

Accession NZ_CP083020.1
Description Klebsiella pneumoniae strain 6709.15-I plasmid p4-6709.15-I, complete sequence
Source refseq
Topology circular
Length 3541 bp
GC Content 0.43 %
Created at NCBI Dec. 11, 2021



Assembly

Genome Data Information

Accession GCF_021137775.1
Assembly Coverage 328.832


Biosample

Curated Collection Information
Accession 21016534

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.947928N;7.422277E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.95/7.42
Address Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTI
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP041089.1 See Comparison
NZ_CP143506.1 See Comparison
OW995949.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP041089.1 See Comparison
NZ_CP143506.1 See Comparison
OW995949.1 See Comparison
OW969760.1 See Comparison
OW849355.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP083015.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP083025.1 See Comparison
NZ_CP018739.1 See Comparison
OW969760.1 See Comparison
NZ_CP018739.1 See Comparison
OW849355.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP083015.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP018739.1 See Comparison
NZ_CP143506.1 See Comparison
OW995949.1 See Comparison
OW969760.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP083025.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP083025.1 See Comparison
NZ_CP041089.1 See Comparison
OW849355.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP083015.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP143506.1 See Comparison
NZ_CP041089.1 See Comparison
OW849355.1 See Comparison
NZ_CP083015.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP018739.1 See Comparison
NZ_CP143506.1 See Comparison
OW995949.1 See Comparison
OW969760.1 See Comparison
OW849355.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP083025.1 See Comparison
NZ_CP041089.1 See Comparison
OW995949.1 See Comparison
OW969760.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP083020.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP083015.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP018739.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP083025.1 See Comparison
OW849355.1 See Comparison
NZ_CP041089.1 See Comparison
NZ_CP143506.1 See Comparison
OW995949.1 See Comparison
OW969760.1 See Comparison
NZ_CP086422.1 See Comparison
NZ_CP086430.1 See Comparison
NZ_CP086438.1 See Comparison
NZ_CP086454.1 See Comparison
NZ_CP083040.1 See Comparison
NZ_CP086446.1 See Comparison
NZ_CP082974.1 See Comparison
NZ_CP083025.1 See Comparison
NZ_CP018739.1 See Comparison
NZ_CP082984.1 See Comparison
NZ_CP083015.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore