Plasmid NZ_CP082794.1

Sequence

Nucleotide Information

Accession	NZ_CP082794.1
Description	Klebsiella pneumoniae strain KP4823 plasmid pKP4823_mcr, complete sequence
Source	refseq
Topology	circular
Length	34685 bp
GC Content	0.42 %
Created at NCBI	Sept. 2, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_018138305.2
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	18789105

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Yiwu
Original Query Type	name
Coordinates (Lat/Lon)	29.31/120.07
Address	China,Yiwu

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP082794.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	mcr-1.1		copy
PGAG	virB10		copy
PGAG	virB11		copy
PGAG	taxB		copy
PGAG	cag pathogenicity island Cag12 family protein		copy
PGAG	TrbM/KikA/MpfK family conjugal transfer protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	thermonuclease family protein		copy
PGAG	AAA family ATPase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 48 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000224__NC_022105_00002	IncX4	17716	18588	minus	100	100	0	1613
relaxase	NC_013718_00057	MOBP	24580	25806	plus	99.511	100	0	843
mate-pair-formation	NC_013718_00041	MPF_T	1856	3715	plus	98.548	100	0	1161
mate-pair-formation	NC_021079_00038	MPF_T	31213	32280	plus	99.719	99	2.6999999999999997e-172	539
mate-pair-formation	NC_013718_00045	MPF_T	32822	33505	plus	100	100	1.4399999999999998e-137	432
mate-pair-formation	NC_013718_00044	MPF_T	33505	34410	plus	99.669	100	0	592
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 6 of 6 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2