Plasmid NZ_CP082016.1

Sequence

Nucleotide Information

Accession NZ_CP082016.1
Description Klebsiella pneumoniae strain KP18-238 plasmid pKP18-238-2, complete sequence
Source refseq
Topology circular
Length 107713 bp
GC Content 0.53 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCF_019823855.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 20928632

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.73N;113.70E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.73/113.70
Address Weilai Road, Hanghaidonglu, Guancheng Hui District, Zhengzhou, 金水区, Henan, 450000, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Brain congestion
DOID/SYMP
  • Brain disease (DOID:936 )
    • A central nervous system disease that is located_in the brain.
  • Congestion (SYMP:0000237 )
    • A respiratory system and chest symptom that is characterized by an excessive accumulation especially of blood or mucus.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP082016.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore