Plasmid NZ_CP082007.1

Sequence

Nucleotide Information

Accession NZ_CP082007.1
Description Klebsiella pneumoniae strain KP18-8 plasmid pKP18-8-1, complete sequence
Source refseq
Topology circular
Length 174262 bp
GC Content 0.52 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCF_019823785.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 20928630

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.73N;113.70E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.73/113.70
Address Weilai Road, Hanghaidonglu, Guancheng Hui District, Zhengzhou, 金水区, Henan, 450000, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Multiple injuries
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP082007.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoAcopy
amrfinderplussilScopy
amrfinderpluspcoBcopy
amrfinderplussilCcopy
amrfinderplussilFcopy
amrfinderplussilAcopy
amrfinderplussilBcopy
amrfinderplussilRcopy
amrfinderplusarsBcopy
amrfinderplusarsAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 183 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021231_00058MOBF139059144314minus95.89310003291
relaxaseCP035180_00077MOBF144326145078minus92.431000385
replicon000107__CP014778_00094IncFIB2669427704plus90.20810001319
repliconCP017721_00179rep_cluster_2183119231120058minus82.289960715
replicon000128__CP023916IncFII120093120326plus1001005.72e-119433
mate-pair-formationNC_021502_00150MPF_T144317146623minus99.35110001449
mate-pair-formationNC_014312_00141MPF_F149242152061minus10010001882
mate-pair-formationNC_019165_00034MPF_F152064153419minus96.239990806
mate-pair-formationNC_021654_00016MPF_F156313158274minus98.7779801243
mate-pair-formationNC_019389_00080MPF_F158327158962minus97.171005.32e-136427
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2