Plasmid NZ_CP081907.1

Sequence

Nucleotide Information

Accession NZ_CP081907.1
Description Parabacteroides distasonis strain BFG-238 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 98241 bp
GC Content 0.43 %
Created at NCBI Sept. 29, 2021



Assembly

Genome Data Information

Accession GCF_020091445.1
Assembly Coverage 448


Biosample

Curated Collection Information
Accession 15546933

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.0025N;77.1044W
Original Query Type coordinates
Coordinates (Lat/Lon) 39.00/-77.10
Address NIH Clinical Center, 10, Center Drive, Maplewood, Pooks Hill, Bethesda, Montgomery County, Maryland, 20892, United States

ECOSYSTEM
Original Query Homo sapiens,Biopsy
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query BACTEROIDES INFECTIONS
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP081905.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP081907.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP069564.1 See Comparison
NZ_CP081905.1 See Comparison
NZ_CP072219.1 See Comparison
NZ_CP072233.1 See Comparison
NZ_CP072230.1 See Comparison
NZ_CP072245.1 See Comparison
NZ_CP072253.1 See Comparison
NZ_CP072238.1 See Comparison
NZ_CP072223.1 See Comparison
NZ_CP072241.1 See Comparison
NZ_CP072228.1 See Comparison
NZ_CP072215.1 See Comparison
NZ_CP069564.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2