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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP081723.1
Sequence
Nucleotide Information
Accession
NZ_CP081723.1
Description
Escherichia coli strain CX05 plasmid unnamed4, complete sequence
Source
refseq
Topology
circular
Length
3206 bp
GC Content
0.49 %
Created at NCBI
Sept. 24, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_019971035.1
Assembly Coverage
138
Biosample
Curated Collection Information
Accession
18446039
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Canada,Alberta
Original Query Type
name
Coordinates (Lat/Lon)
55.00/-115.00
Address
Canada,Alberta
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP081721.1
NZ_CP081722.1
NZ_CP081720.1
Similar Plasmids
based on Mash distance
OW967018.1
See Comparison
NZ_CP072544.1
See Comparison
NZ_CP081723.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
NZ_CP072544.1
See Comparison
OW967018.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
OW967018.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
OW967018.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
NZ_CP072544.1
See Comparison
OW967018.1
See Comparison
NZ_CP072544.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
NZ_CP072544.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP072544.1
See Comparison
OW967018.1
See Comparison
NZ_CP081747.1
See Comparison
NZ_CP081728.1
See Comparison
NZ_CP081766.1
See Comparison
NZ_CP081718.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore