Plasmid NZ_CP080515.1

Sequence

Nucleotide Information

Accession NZ_CP080515.1
Description Salmonella enterica subsp. enterica serovar Minnesota strain SA18578 plasmid pSA18578_2, complete sequence
Source refseq
Topology circular
Length 129660 bp
GC Content 0.51 %
Created at NCBI Aug. 11, 2021



Assembly

Genome Data Information

Accession GCF_019468645.1
Assembly Coverage 40


Biosample

Curated Collection Information

Accession 20518183

PLASMID INFORMATION
Genotype ST548

GEOGRAPHICAL INFORMATION
Original Query 24.774265N;46.738586E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.77/46.74
Address Ad Diwan, Hamra District, Al Rawda Muncipality, Al Malaz, Riyadh governorate, Riyadh Region, 13241, Saudi Arabia

ECOSYSTEM
Original Query food
Classification food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance


Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusaph(3')-Iacopy
amrfinderplusybtQcopy
amrfinderplusybtPcopy
PGAGRepB family plasmid replication initiator proteincopy
PGAGhypothetical proteincopy
PGAGphosphoadenosine phosphosulfate reductase family proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 117 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000092__CP025470IncC1417plus1001000771
replicon000090__FJ705807_00003IncA129013129659plus93.818990974
mate-pair-formationNC_012885_00167MPF_F115781117211plus97.4841000931
oriTJQ319772MOBH127763128160plus1001000736
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2