Plasmid NZ_CP080515.1
Sequence
Nucleotide Information
Accession | NZ_CP080515.1 |
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Description | Salmonella enterica subsp. enterica serovar Minnesota strain SA18578 plasmid pSA18578_2, complete sequence |
Source | refseq |
Topology | circular |
Length | 129660 bp |
GC Content | 0.51 % |
Created at NCBI | Aug. 11, 2021 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Salmonella enterica (70803) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Salmonella (590) |
Species | Salmonella_enterica (28901) |
Strain |
Biosample
Curated Collection Information
Accession | 20518183 |
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PLASMID INFORMATION
Genotype | ST548 |
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GEOGRAPHICAL INFORMATION
Original Query | 24.774265N;46.738586E |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | 24.77/46.74 |
Address | Ad Diwan, Hamra District, Al Rawda Muncipality, Al Malaz, Riyadh governorate, Riyadh Region, 13241, Saudi Arabia |
ECOSYSTEM
Original Query | food |
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Classification | food |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
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amrfinderplus | aph(3')-Ia | copy | ||
amrfinderplus | ybtQ | copy | ||
amrfinderplus | ybtP | copy | ||
PGAG | RepB family plasmid replication initiator protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | phosphoadenosine phosphosulfate reductase family protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 117 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000092__CP025470 | IncC | 1 | 417 | plus | 100 | 100 | 0 | 771 |
replicon | 000090__FJ705807_00003 | IncA | 129013 | 129659 | plus | 93.818 | 99 | 0 | 974 |
mate-pair-formation | NC_012885_00167 | MPF_F | 115781 | 117211 | plus | 97.484 | 100 | 0 | 931 |
oriT | JQ319772 | MOBH | 127763 | 128160 | plus | 100 | 100 | 0 | 736 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |