Plasmid NZ_CP080365.1

Sequence

Nucleotide Information

Accession NZ_CP080365.1
Description Klebsiella pneumoniae strain K191773 plasmid pCMY2-191773, complete sequence
Source refseq
Topology circular
Length 95539 bp
GC Content 0.50 %
Created at NCBI Aug. 4, 2021



Assembly

Genome Data Information

Accession GCF_019443585.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 20422820

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,wuxi
Original Query Type name
Coordinates (Lat/Lon) 31.49/120.31
Address China,wuxi

ECOSYSTEM
Original Query Homo sapiens,pure culture,sputum
Classification cell_culture,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP080365.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCMY-2copy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGDUF6685 family proteincopy
PGAGProQ/FINO family proteincopy
PGAGAAA family ATPasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGnucleotide-binding proteincopy
PGAGDUF4238 domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 121 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTJN253636MOBP3785937951minus1001004.37e-41172
repliconMF344577IncI-gamma/K1461077plus10010001906
relaxaseNC_019097MOBP3832141014plus94.3219901668
mate-pair-formationNC_019097_00056MPF_I4109143349minus98.8059201444
mate-pair-formationNC_022267_00057MPF_I5692258121minus97.251000751
mate-pair-formationNC_019111_00038MPF_I6289963276minus96.032941.72e-44161
mate-pair-formationNC_023290_00086MPF_I6333063854minus99.4291003.4000000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6385764558minus1001006.340000000000002e-154479
mate-pair-formationNC_019097_00075MPF_I6585366833minus99.6941000655
mate-pair-formationNC_022267_00069MPF_I6688967536minus99.074915.71e-143448
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2