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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP080161.1
Sequence
Nucleotide Information
Accession
NZ_CP080161.1
Description
Escherichia coli strain PK8261 plasmid pPK8261-2.3kb, complete sequence
Source
refseq
Topology
circular
Length
2313 bp
GC Content
0.41 %
Created at NCBI
Aug. 2, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_019428745.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
20353475
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
31.50N;73.02E
Original Query Type
coordinates
Coordinates (Lat/Lon)
31.50/73.02
Address
Faisalabad Saddar Tehsil, Faisalabad District, Punjab, Pakistan
ECOSYSTEM
Original Query
chicken
Classification
host_associated
Host-associated Taxon
Gallus gallus (
9031
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
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Plasmids from same Biosample
NZ_CP080162.1
NZ_CP080160.1
NZ_CP080159.1
NZ_CP080158.1
NZ_CP080157.1
NZ_CP080156.1
Similar Plasmids
based on Mash distance
NZ_CP080161.1
See Comparison
NZ_CP080170.1
See Comparison
NZ_CP080170.1
See Comparison
NZ_CP080170.1
See Comparison
NZ_CP080170.1
See Comparison
NZ_CP080170.1
See Comparison
NZ_CP080170.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP080170.1
Sequence
Accession
:
NZ_CP080170.1
Description
: Escherichia coli strain PK8275 plasmid pPK8275-2.3kb, complete sequence
Source
: refseq
Created at NCBI
: Aug. 2, 2021
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
20353479
GEOGRAPHICAL INFORMATION
Original Query
: 31.50N;73.02E
Original Query Type
: coordinates
Address
: Faisalabad Saddar Tehsil, Faisalabad District, Punjab, Pakistan
Coordinates
(Lat/Lon): 31.50/73.02
ECOSYSTEM
Original Query
: chicken
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore