Plasmid NZ_CP079894.1

Sequence

Nucleotide Information

Accession NZ_CP079894.1
Description Escherichia fergusonii strain 5zf15-2-1 plasmid p35ZF15-2-1, complete sequence
Source refseq
Topology circular
Length 30790 bp
GC Content 0.43 %
Created at NCBI Sept. 24, 2021



Assembly

Genome Data Information

Accession GCF_020002305.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 20243900

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Zhejiang
Original Query Type name
Coordinates (Lat/Lon) 29.00/120.00
Address China,Zhejiang

ECOSYSTEM
Original Query pig,pig feces,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP079894.1 See Comparison


Plasmid Visualization

JSON GENBANK




Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000215__KC853434_00019IncX11132011766minus98.4341000787
relaxaseNC_019047_00022MOBP1740218556plus1001000726
mate-pair-formationNC_019047_00035MPF_T1537plus100981.64e-94325
mate-pair-formationNC_023277_00163MPF_T2117823322plus82.7979901241
mate-pair-formationNC_019047_00030MPF_T2435825410plus1001000585
mate-pair-formationNC_019047_00031MPF_T2565126322plus100935.5599999999999996e-136428
mate-pair-formationNC_019047_00032MPF_T2633127257plus99.3531000625
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2