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v. 2024_05_31_v2
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Sequence
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Antimicrobial Resistance Genes
Biosyntethic Gene Clusters
Typing
Plasmid NZ_CP079726.1
Sequence
Nucleotide Information
Accession
NZ_CP079726.1
Description
Klebsiella pneumoniae strain KP3295 plasmid pKP3295-1, complete sequence
Source
refseq
Topology
circular
Length
177848 bp
GC Content
0.50 %
Created at NCBI
July 27, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_019334545.1
Assembly Coverage
1
Biosample
Curated Collection Information
Accession
20170224
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
29.30N;120.07E
Original Query Type
coordinates
Coordinates (Lat/Lon)
29.30/120.07
Address
稠州北路, Yiwu, Jinhua, Zhejiang, China
ECOSYSTEM
Original Query
Homo sapiens,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Sex
male
DISEASE
Original Query
Paraplegia
DOID/SYMP
Paraplegia
(
DOID:607
)
None
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP079734.1
NZ_CP079733.1
NZ_CP079732.1
NZ_CP079731.1
NZ_CP079730.1
NZ_CP079729.1
NZ_CP079728.1
NZ_CP079727.1
Similar Plasmids
based on Mash distance
NZ_CP045675.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP045675.1
See Comparison
NZ_CP045675.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP079726.1
See Comparison
NZ_CP045675.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP045675.1
See Comparison
NZ_CP097386.1
See Comparison
NZ_CP045675.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore