Plasmid NZ_CP079685.1

Sequence

Nucleotide Information

Accession NZ_CP079685.1
Description Klebsiella pneumoniae subsp. pneumoniae strain WRC30_AI1547MPCH plasmid pAI1547MPCH_P2, complete sequence
Source refseq
Topology circular
Length 71306 bp
GC Content 0.53 %
Created at NCBI July 27, 2021



Assembly

Genome Data Information

Accession GCF_019317245.1
Assembly Coverage 91


Biosample

Curated Collection Information
Accession 20130732

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,Pus
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Abscess
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP044043.1 See Comparison
NZ_CP036329.1 See Comparison
NZ_CP033948.1 See Comparison
CP128779.1 See Comparison
NZ_CP095559.1 See Comparison
NZ_CP146147.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP146172.1 See Comparison
NZ_CP079638.1 See Comparison
CP067712.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP079181.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP044043.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP036329.1 See Comparison
CP128779.1 See Comparison
NZ_CP146172.1 See Comparison
CP067712.1 See Comparison
NZ_CP033948.1 See Comparison
NZ_CP095559.1 See Comparison
NZ_CP146147.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP079181.1 See Comparison
NZ_CP079638.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP036329.1 See Comparison
NZ_CP044043.1 See Comparison
NZ_CP079638.1 See Comparison
CP128779.1 See Comparison
NZ_CP146172.1 See Comparison
CP067712.1 See Comparison
NZ_CP033948.1 See Comparison
NZ_CP095559.1 See Comparison
NZ_CP146147.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP079181.1 See Comparison
NZ_CP044043.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP095559.1 See Comparison
NZ_CP036329.1 See Comparison
NZ_CP033948.1 See Comparison
CP128779.1 See Comparison
NZ_CP033948.1 See Comparison
NZ_CP146147.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP146172.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP079181.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP036329.1 See Comparison
CP067712.1 See Comparison
NZ_CP079638.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP044043.1 See Comparison
NZ_CP095559.1 See Comparison
CP128779.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP146147.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP146172.1 See Comparison
CP067712.1 See Comparison
NZ_CP033948.1 See Comparison
NZ_CP079638.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP044043.1 See Comparison
NZ_CP079181.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP036329.1 See Comparison
NZ_CP146147.1 See Comparison
CP128779.1 See Comparison
NZ_CP146152.1 See Comparison
NZ_CP146177.1 See Comparison
NZ_CP146167.1 See Comparison
NZ_CP146182.1 See Comparison
NZ_CP146157.1 See Comparison
NZ_CP095559.1 See Comparison
NZ_CP146187.1 See Comparison
NZ_CP146162.1 See Comparison
NZ_CP083057.1 See Comparison
NZ_CP146172.1 See Comparison
CP067712.1 See Comparison
NZ_CP079685.1 See Comparison
NZ_CP079644.1 See Comparison
NZ_CP079638.1 See Comparison
NZ_CP079609.1 See Comparison
NZ_CP079188.1 See Comparison
NZ_CP079181.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore