Plasmid NZ_CP079681.1

Sequence

Nucleotide Information

Accession NZ_CP079681.1
Description Klebsiella pneumoniae subsp. pneumoniae strain WRC29_CMC309MPCH plasmid pCMC309MPCH_P8, complete sequence
Source refseq
Topology circular
Length 1209 bp
GC Content 0.42 %
Created at NCBI July 27, 2021



Assembly

Genome Data Information

Accession GCF_019317225.1
Assembly Coverage 64


Biosample

Curated Collection Information
Accession 20130677

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,Endotracheal aspirate
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP079162.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC08_CMC432MC plasmid pCMC432M_P7, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115186
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079171.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC09_CMC309PC plasmid pCMC309P_P7, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115187
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,Endotracheal aspirate
    • Classification: host_associated,respiratory_system,trachea
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP079144.1
    • Description: Klebsiella pneumoniae subsp. pneumoniae strain WRC05_CMC387PC plasmid pCMC387P_P6, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (72407)
  • Biosample
    Accession: 20115179
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9165N;79.1325E
    • Original Query Type: coordinates
    • Address: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Sepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore