Plasmid NZ_CP079631.1

Sequence

Nucleotide Information

Accession NZ_CP079631.1
Description Klebsiella pneumoniae subsp. pneumoniae strain WRC18_CMC307MC plasmid pCMC307M_P2, complete sequence
Source refseq
Topology circular
Length 197458 bp
GC Content 0.51 %
Created at NCBI July 27, 2021



Assembly

Genome Data Information

Accession GCF_019317085.1
Assembly Coverage 67


Biosample

Curated Collection Information
Accession 20130509

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,Endotracheal aspirate
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusarmAcopy
amrfinderplusmerCcopy
amrfinderplusmerTcopy
amrfinderplusmph(E)copy
amrfinderplusmsr(E)copy
amrfinderplussul1copy
amrfinderplusarr-3copy
amrfinderplusblaCTX-M-15copy
amrfinderplusaadA1copy
amrfinderplusaadA1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 238 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAB040037MOBH196245196642plus1001000736
relaxaseNC_012885_00072MOBH4264445610plus88.6989901595
replicon000092__CP025470IncC11101plus99.18310001984
replicon000562__KT346360_00001rep_cluster_1254123216123970minus90.464810996
relaxaseNC_012690_00071MOBH5217152812plus98.1311002.25e-136440
mate-pair-formationNC_009140_00071MPF_F4561347475plus10010001177
mate-pair-formationNC_014170_00023MPF_F5189852812plus92.1311000569
mate-pair-formationNC_012885_00083MPF_F5281254125plus90.4111000752
mate-pair-formationNC_016974_00085MPF_F5412554700plus99.4791001.07e-114365
mate-pair-formationNC_012885_00088MPF_T6163964083plus98.1610001640
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2