Plasmid NZ_CP079185.1

Sequence

Nucleotide Information

Accession NZ_CP079185.1
Description Klebsiella pneumoniae subsp. pneumoniae strain WRC13_AI2040PC plasmid pAI2040P_P6, complete sequence
Source refseq
Topology circular
Length 4863 bp
GC Content 0.43 %
Created at NCBI July 22, 2021



Assembly

Genome Data Information

Accession GCF_019287095.1
Assembly Coverage 85


Biosample

Curated Collection Information
Accession 20115569

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP138761.1 See Comparison
CP132212.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
NZ_CP047739.1 See Comparison
NZ_CP056183.1 See Comparison
NZ_CP104469.1 See Comparison
CP067716.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
NZ_CP138761.1 See Comparison
NZ_CP072407.1 See Comparison
NZ_CP072412.1 See Comparison
NZ_CP083061.1 See Comparison
NZ_CP079192.1 See Comparison
CP132212.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
NZ_CP047739.1 See Comparison
NZ_CP056183.1 See Comparison
NZ_CP104469.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
CP067716.1 See Comparison
NZ_CP079192.1 See Comparison
NZ_CP083061.1 See Comparison
NZ_CP072407.1 See Comparison
NZ_CP072412.1 See Comparison
CP132212.1 See Comparison
NZ_CP138761.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
NZ_CP047739.1 See Comparison
NZ_CP104469.1 See Comparison
NZ_CP056183.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
NZ_CP083061.1 See Comparison
CP067716.1 See Comparison
NZ_CP079192.1 See Comparison
NZ_CP072407.1 See Comparison
NZ_CP072412.1 See Comparison
CP132212.1 See Comparison
NZ_CP138761.1 See Comparison
CP067716.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_CP047739.1 See Comparison
NZ_CP056183.1 See Comparison
NZ_CP104469.1 See Comparison
NZ_CP079192.1 See Comparison
NZ_CP083061.1 See Comparison
NZ_CP072407.1 See Comparison
NZ_CP072412.1 See Comparison
NZ_CP138761.1 See Comparison
CP132212.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
NZ_CP056183.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP047739.1 See Comparison
CP067716.1 See Comparison
NZ_CP104469.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
NZ_CP079192.1 See Comparison
NZ_CP083061.1 See Comparison
NZ_CP072407.1 See Comparison
NZ_CP072412.1 See Comparison
CP132212.1 See Comparison
NZ_CP138761.1 See Comparison
NZ_KU302807.1 See Comparison
NZ_AP027526.1 See Comparison
NZ_CP104469.1 See Comparison
NZ_CP070462.1 See Comparison
NZ_CP070414.1 See Comparison
NZ_CP070453.1 See Comparison
NZ_CP070429.1 See Comparison
NZ_CP047739.1 See Comparison
NZ_CP056183.1 See Comparison
NZ_CP083061.1 See Comparison
OW970509.1 See Comparison
OW970412.1 See Comparison
CP067716.1 See Comparison
NZ_CP079185.1 See Comparison
NZ_CP079192.1 See Comparison
NZ_CP072412.1 See Comparison
NZ_CP072407.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore