Plasmid NZ_CP079123.1

Sequence

Nucleotide Information

Accession	NZ_CP079123.1
Description	Klebsiella pneumoniae subsp. pneumoniae strain WRC03_AI1235PC plasmid pAI1235P_P3, complete sequence
Source	refseq
Topology	circular
Length	96887 bp
GC Content	0.52 %
Created at NCBI	July 22, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (72407)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_019286455.1
Assembly Coverage	91

Biosample

Curated Collection Information

Accession	20115067

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	12.9165N;79.1325E
Original Query Type	coordinates
Coordinates (Lat/Lon)	12.92/79.13
Address	NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Urinary tract infection
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP079134.1	See Comparison
NZ_CP079134.1	See Comparison
NZ_CP079134.1	See Comparison
NZ_CP079134.1	See Comparison
NZ_CP079134.1	See Comparison
NZ_CP079134.1	See Comparison
NZ_CP079123.1	See Comparison
NZ_CP079134.1	See Comparison

Plasmid Visualization

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Hex

R

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B

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Source	Element Name	Display	Sequence	Favorite

amrfinderplus	arr-2		copy
amrfinderplus	blaCTX-M-15		copy
amrfinderplus	aadA1		copy
amrfinderplus	aadA1		copy
amrfinderplus	aac(3)-IId		copy
amrfinderplus	aac(6')-Ib		copy
amrfinderplus	aph(3'')-Ib		copy
amrfinderplus	ere(A)		copy
amrfinderplus	blaTEM-1		copy
amrfinderplus	blaOXA-9		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 114 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000204__CP008701_00115	IncR	42451	43346	plus	99.442	100	0	1626
replicon	000207__CP025517	IncR	80977	81761	plus	100	100	0	1450
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2