Plasmid NZ_CP077829.1

Sequence

Nucleotide Information

Accession NZ_CP077829.1
Description Acinetobacter baumannii strain DETAB-E351 plasmid pDETAB11, complete sequence
Source refseq
Topology circular
Length 5602 bp
GC Content 0.33 %
Created at NCBI May 25, 2022



Assembly

Genome Data Information

Accession GCF_023517175.1
Assembly Coverage 150


Biosample

Curated Collection Information
Accession 19762827

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.256965N;120.201625E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.20
Address 采东路, 钱杭社区, Sijiqing, Shangcheng District, Hangzhou, Zhejiang, 310026, China

ECOSYSTEM
Original Query Ventilator shelf_P101_BU22
Classification anthropogenic
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON




Identical Plasmids

100% Sequence Identity




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2