Plasmid NZ_CP077742.1

Sequence

Nucleotide Information

Accession NZ_CP077742.1
Description Staphylococcus aureus strain NL1 plasmid pNL1-01, complete sequence
Source refseq
Topology circular
Length 1373 bp
GC Content 0.36 %
Created at NCBI Sept. 24, 2021



Assembly

Genome Data Information

Accession GCF_020003165.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 19813410

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 52.51425405N;6.12458278E
Original Query Type coordinates
Coordinates (Lat/Lon) 52.51/6.12
Address Dokter van Heesweg, Health Innovation Park, Zwolle, Overijssel, Netherlands, 8025 AB, Netherlands

ECOSYSTEM
Original Query Homo sapiens,nose
Classification host_associated,nasal,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query colonization
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP077739.1
    • Description: Staphylococcus aureus strain UMCG578 plasmid pUMCG578-01, complete sequence
    • Source: refseq
    • Created at NCBI: Sept. 24, 2021

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 19812812
  • GEOGRAPHICAL INFORMATION
    • Original Query: 53.22201N;6.57677E
    • Original Query Type: coordinates
    • Address: University Medical Centre Groningen, 1, Hanzeplein, UMCG, Centrum, Groningen, Netherlands, 9713 GZ, Netherlands
    • Coordinates (Lat/Lon): 53.22/6.58
  • ECOSYSTEM
    • Original Query: Homo sapiens,sinus pus
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: chronic purulent sinusitis
    • DOID/SYMP:
      • Sinusitis (DOID:0050127 )
        • A paranasal sinus disease involving inflammation of the paranasal sinuses resulting from bacterial, fungal, viral infection, allergic or autoimmune issues. Symptoms can include fever, weakness, fatigue, cough and congestion. There may also be mucus drainage in the back of the throat, called postnasal drip.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2