Plasmid NZ_CP077412.1

Sequence

Nucleotide Information

Accession NZ_CP077412.1
Description Enterobacter asburiae strain FDAARGOS 1432 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 118412 bp
GC Content 0.53 %
Created at NCBI June 29, 2021



Assembly

Genome Data Information

Accession GCF_019048485.1
Assembly Coverage 1482.15


Biosample

Curated Collection Information
Accession 16357574

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany,Braunschweig
Original Query Type name
Coordinates (Lat/Lon) 52.26/10.52
Address Germany,Braunschweig

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP077412.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusshsPcopy
amrfinderplusncrCcopy
amrfinderplusncrYcopy
amrfinderplusncrBcopy
amrfinderplusncrAcopy
amrfinderplusclpKcopy
amrfinderplustrxLHRcopy
amrfinderplusyfdX1copy
amrfinderplusyfdX2copy
amrfinderplushdeD-GIcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 141 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconAF250878IncFIA5321653603minus97.4231000662
replicon000113__CP022035IncFII8477285665minus88.14310001064
relaxaseCP035637_00043MOBF8927994531minus83.60210003088
mate-pair-formationNC_017627_00069MPF_T9492196738minus80.1988701023
mate-pair-formationNC_019165_00034MPF_F101217102530minus92.922960757
mate-pair-formationNC_022609_00081MPF_F107269108258minus87.5761000600
mate-pair-formationNC_014312_00128MPF_F108275108898minus80.288991.2299999999999999e-101328
mate-pair-formationNC_014312_00118MPF_F115545116273minus82.305981.9300000000000003e-129410
mate-pair-formationNC_022609_00068MPF_F116269116826minus80.645994.89e-96311
mate-pair-formationNC_014312_00116MPF_F116848117150minus91.0891009.260000000000001e-57194
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2