Plasmid NZ_CP075858.1

Sequence

Nucleotide Information

Accession NZ_CP075858.1
Description Escherichia coli strain S19-651 plasmid pS19_651-f, complete sequence
Source refseq
Topology circular
Length 4714 bp
GC Content 0.55 %
Created at NCBI May 24, 2021



Assembly

Genome Data Information

Accession GCF_016404165.2
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 16993361

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.40N;8.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.40/8.55
Address Universitäres Tierspital, 260, Winterthurerstrasse, Oerlikon, Kreis 11, Zurich, District Zurich, Zurich, 8057, Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query gastrointestinal illnes
DOID/SYMP
  • Gastrointestinal system disease (DOID:77 )
    • A disease of anatomical entity that is located_in the gastrointestinal tract.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP075858.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGmobQcopy
PGAGhypothetical proteincopy
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerMOBQcopy
MOB-typerrep_cluster_2134copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNZ_AWFJ01000122_00007MOBQ2733plus89.344998.64e-143462
relaxaseNZ_AWFJ01000122_00007MOBQ32314712plus95.142990905
repliconCP014098_00009rep_cluster_213416462560plus10010001690
oriTNZ_CP011431MOBQ30563230minus961001.21e-74285
oriTDQ318958MOBQ32303589minus1001000665
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2