Plasmid NZ_CP075747.1

Sequence

Nucleotide Information

Accession	NZ_CP075747.1
Description	Escherichia coli strain CPF6 plasmid unnamed5, complete sequence
Source	refseq
Topology	circular
Length	1459 bp
GC Content	0.51 %
Created at NCBI	Aug. 3, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024499155.1
Assembly Coverage	10

Biosample

Curated Collection Information

Accession	19296497

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Thailand,Bangkok
Original Query Type	name
Coordinates (Lat/Lon)	13.75/100.49
Address	Thailand,Bangkok

ECOSYSTEM

Original Query	Sus scrofa,feacal sample,Pig feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_OW967974.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP099759.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP075747.1	See Comparison
NZ_OW967974.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP099759.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_OW967974.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP099759.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_OW967974.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_CP099759.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_OW967974.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_CP109884.1	See Comparison
NZ_CP099759.1	See Comparison
NZ_OW967974.1	See Comparison
NZ_AP024693.1	See Comparison
NZ_CP019021.1	See Comparison
NZ_CP008721.1	See Comparison
NZ_CP033852.1	See Comparison
NZ_CP135493.1	See Comparison
NZ_CP048343.1	See Comparison
NZ_LR890541.1	See Comparison
NZ_CP061061.1	See Comparison
NZ_CP061070.1	See Comparison
NZ_CP103738.1	See Comparison
NZ_CP099759.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore