Plasmid NZ_CP075671.1

Sequence

Nucleotide Information

Accession NZ_CP075671.1
Description Escherichia coli strain STEC2018-553 plasmid pSTEC2018_553-f
Source refseq
Topology linear
Length 5698 bp
GC Content 0.38 %
Created at NCBI May 24, 2021



Assembly

Genome Data Information

Accession GCF_016403675.2
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 16993384

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.40N;8.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.40/8.55
Address Universitäres Tierspital, 260, Winterthurerstrasse, Oerlikon, Kreis 11, Zurich, District Zurich, Zurich, 8057, Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query gastrointestinal illnes
DOID/SYMP
  • Gastrointestinal system disease (DOID:77 )
    • A disease of anatomical entity that is located_in the gastrointestinal tract.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP075671.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore