Plasmid NZ_CP075662.1

Sequence

Nucleotide Information

Accession NZ_CP075662.1
Description Escherichia coli strain STEC17-183 plasmid pSTEC17_183-j
Source refseq
Topology linear
Length 837 bp
GC Content 0.46 %
Created at NCBI May 24, 2021



Assembly

Genome Data Information

Accession GCF_016404015.2
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 16993368

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.40N;8.55E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.40/8.55
Address Universitäres Tierspital, 260, Winterthurerstrasse, Oerlikon, Kreis 11, Zurich, District Zurich, Zurich, 8057, Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query gastrointestinal illnes
DOID/SYMP
  • Gastrointestinal system disease (DOID:77 )
    • A disease of anatomical entity that is located_in the gastrointestinal tract.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP075662.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
No data available in table
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2