Plasmid NZ_CP075461.1
Sequence
Nucleotide Information
| Accession | NZ_CP075461.1 |
|---|---|
| Description | Escherichia coli strain NT1F10 plasmid pNT1F10-94k, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 94512 bp |
| GC Content | 0.47 % |
| Created at NCBI | May 18, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16120638 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 32.01N;120.86E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 32.01/120.86 |
| Address | 南通大学附属医院, Xisi Road, 新城桥街道, Chongchuan District, Nantong, Jiangsu, 226000, China |
ECOSYSTEM
| Original Query | pig,genome,pig farm |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | phage tail protein | copy | ||
| PGAG | tail fiber assembly protein | copy | ||
| PGAG | phage tail protein | copy | ||
| PGAG | phage tail protein | copy | ||
| PGAG | phage tail protein | copy | ||
| PGAG | phage tail protein | copy | ||
| PGAG | phage tail protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | bleomycin hydrolase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 101 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000230__CP009168_00001 | IncY | 29312 | 30172 | minus | 98.839 | 100 | 0 | 1535 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |