Plasmid NZ_CP074546.1

Sequence

Nucleotide Information

Accession NZ_CP074546.1
Description Klebsiella aerogenes strain S33_CRE34 plasmid pCRE34_1, complete sequence
Source refseq
Topology circular
Length 33598 bp
GC Content 0.44 %
Created at NCBI Jan. 12, 2023



Assembly

Genome Data Information

Accession GCF_027595705.1
Assembly Coverage 301


Biosample

Curated Collection Information
Accession 16387652

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.0075N;78.9384W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.01/-78.94
Address Duke University Hospital, 2301, Erwin Road, Crest Street, Durham, Durham County, North Carolina, 27710, United States

ECOSYSTEM
Original Query Homo sapiens,Lt groin wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacterial infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK




Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000221__NC_025130_00012IncX31585216724minus98.16710001524
relaxaseNC_020552_00059MOBP2180022957plus98.1871000750
mate-pair-formationNC_017624_00009MPF_T3432139plus95.3269801125
mate-pair-formationNC_023277_00163MPF_T2559027740plus89.95810001335
mate-pair-formationNC_019083_00032MPF_T2878329835plus99.1451000635
mate-pair-formationNC_019157_00030MPF_T3003330758plus97.9341002.66e-142446
mate-pair-formationNC_019083_00030MPF_T3076731693plus99.0291000632
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2