Plasmid NZ_CP074123.1

Sequence

Nucleotide Information

Accession NZ_CP074123.1
Description Escherichia coli strain EC16 plasmid pEC16-3, complete sequence
Source refseq
Topology circular
Length 110400 bp
GC Content 0.48 %
Created at NCBI May 13, 2021



Assembly

Genome Data Information

Accession GCF_018316615.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 18877259

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Jinhua
Original Query Type name
Coordinates (Lat/Lon) 29.11/119.65
Address China,Jinhua

ECOSYSTEM
Original Query single bacteria,ascites
Classification disease,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP
  • Ascites (SYMP:0000526 )
    • An abdominal symptom consisting of an abnormal accumulation of serous fluid in the spaces between tissues and organs in the cavity of the abdomen.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGyacAcopy
PGAGyacBcopy
PGAG3'-5' exonucleasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGyagAcopy
PGAGcolicin Ia central receptor-binding domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 126 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019097MOBP5042153117plus97.10810001727
oriTJN253636MOBP4995950051minus1001004.37e-41172
repliconMG764547IncI-gamma/K1461077plus99.90310001901
mate-pair-formationNC_019097_00056MPF_I5992862360minus91.98110001441
mate-pair-formationNC_022267_00057MPF_I7053071729minus97.251000751
mate-pair-formationNC_019111_00038MPF_I7648376884minus97.0151003.53e-51180
mate-pair-formationNC_023290_00086MPF_I7693877462minus98.8571009.14e-100321
mate-pair-formationNC_015965_00072MPF_I7746578166minus1001006.340000000000002e-154479
mate-pair-formationNC_019097_00075MPF_I7946180441minus99.6941000655
mate-pair-formationNC_022267_00069MPF_I8049781144minus98.611911.72e-142447
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2