Plasmid NZ_CP074118.1

Sequence

Nucleotide Information

Accession NZ_CP074118.1
Description Klebsiella pneumoniae subsp. pneumoniae strain kpn-hnqyy plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 116047 bp
GC Content 0.53 %
Created at NCBI May 14, 2021



Assembly

Genome Data Information

Accession GCF_018314145.1
Assembly Coverage 99.95


Biosample

Curated Collection Information
Accession 18920621

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.16N;112.42E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.16/112.42
Address Chengguan, Ruyang County, Luoyang, Henan, China

ECOSYSTEM
Original Query Homo sapiens,Abdominal pus
Classification abdominal,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query leukemia/pancreatitis
DOID/SYMP
  • Leukemia (DOID:1240 )
    • A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
  • Pancreatitis (DOID:4989 )
    • A pancreas disease that is characterized by inflammation of the pancreas.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074118.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore