Plasmid NZ_CP074041.1

Sequence

Nucleotide Information

Accession NZ_CP074041.1
Description Escherichia coli strain PI7 plasmid pYLPI7h, complete sequence
Source refseq
Topology circular
Length 1454 bp
GC Content 0.50 %
Created at NCBI Aug. 10, 2022



Assembly

Genome Data Information

Accession GCF_024585925.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 18877292

PLASMID INFORMATION
Genotype ST162

GEOGRAPHICAL INFORMATION
Original Query Cuba,San Jose de Las Lajas
Original Query Type name
Coordinates (Lat/Lon) 22.94/-82.14
Address Cuba,San Jose de Las Lajas

ECOSYSTEM
Original Query Pig,pure culture,Rectal Swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074041.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore