Plasmid NZ_CP073897.1

Sequence

Nucleotide Information

Accession NZ_CP073897.1
Description Staphylococcus epidermidis strain V1937538 plasmid p1V1937538
Source refseq
Topology linear
Length 23746 bp
GC Content 0.27 %
Created at NCBI July 27, 2021



Assembly

Genome Data Information

Accession GCF_019330185.1
Assembly Coverage 394


Biosample

Curated Collection Information
Accession 18699898

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany
Original Query Type name
Coordinates (Lat/Lon) 51.08/10.42
Address Germany

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP073845.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073877.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073897.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073845.1 See Comparison
NZ_CP073867.1 See Comparison
NZ_CP073873.1 See Comparison
NZ_CP073829.1 See Comparison
NZ_CP073888.1 See Comparison
NZ_CP073823.1 See Comparison
NZ_CP073880.1 See Comparison
NZ_CP073832.1 See Comparison
NZ_CP073894.1 See Comparison
NZ_CP073838.1 See Comparison
NZ_CP073901.1 See Comparison
NZ_CP073826.1 See Comparison
NZ_CP073870.1 See Comparison
NZ_CP073851.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2