Plasmid NZ_CP072580.1

Sequence

Nucleotide Information

Accession NZ_CP072580.1
Description Enterococcus faecium strain VB12993 plasmid pVB12993_p1, complete sequence
Source refseq
Topology circular
Length 235463 bp
GC Content 0.35 %
Created at NCBI April 10, 2021



Assembly

Genome Data Information

Accession GCF_017815655.1
Assembly Coverage 98.7


Biosample

Curated Collection Information

Accession 18533867

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
  • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization




Similar Plasmids

based on Mash distance


Plasmid Visualization


SourceElement Name Display Sequence Favorite
rgiAAC(6')-Ie-APH(2'')-Ia bifunctional proteincopy
PGAGreplication initiator protein Acopy
PGAGtraEcopy
PGAGDUF5406 family proteincopy
PGAGtnpBcopy
PGAGtnpAcopy
PGAGIS110 family transposasecopy
PGAGArdC-like ssDNA-binding domain-containing proteincopy
PGAGtoprim domain-containing proteincopy
PGAGtopBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 213 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon002374__CP004064_00076rep_cluster_89311041plus99.80810001912
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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