Plasmid NZ_CP072580.1
Sequence
Nucleotide Information
Accession | NZ_CP072580.1 |
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Description | Enterococcus faecium strain VB12993 plasmid pVB12993_p1, complete sequence |
Source | refseq |
Topology | circular |
Length | 235463 bp |
GC Content | 0.35 % |
Created at NCBI | April 10, 2021 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Enterococcus faecium (1352) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Bacillota (1239) |
Class | Bacilli (91061) |
Order | Lactobacillales (186826) |
Family | Enterococcaceae (81852) |
Genus | Enterococcus (1350) |
Species | Enterococcus_faecium (1352) |
Strain |
Biosample
Curated Collection Information
Accession | 18533867 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | 12.9165N;79.1325E |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | 12.92/79.13 |
Address | NH38, Vellore, Vellore District, Tamil Nadu, 632008, India |
ECOSYSTEM
Original Query | Homo sapiens,blood |
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Classification | blood,circulatory_system,host_associated |
Host-associated Taxon |
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DISEASE
Original Query | Sepsis |
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DOID/SYMP |
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Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
rgi | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | copy | ||
PGAG | replication initiator protein A | copy | ||
PGAG | traE | copy | ||
PGAG | DUF5406 family protein | copy | ||
PGAG | tnpB | copy | ||
PGAG | tnpA | copy | ||
PGAG | IS110 family transposase | copy | ||
PGAG | ArdC-like ssDNA-binding domain-containing protein | copy | ||
PGAG | toprim domain-containing protein | copy | ||
PGAG | topB | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 213 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 002374__CP004064_00076 | rep_cluster_893 | 1 | 1041 | plus | 99.808 | 100 | 0 | 1912 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry