Plasmid NZ_CP072400.1

Sequence

Nucleotide Information

Accession NZ_CP072400.1
Description Acinetobacter baumannii strain KSK2 plasmid p2KSK2, complete sequence
Source refseq
Topology circular
Length 87529 bp
GC Content 0.34 %
Created at NCBI April 6, 2021



Assembly

Genome Data Information

Accession GCF_017742855.1
Assembly Coverage 133.14


Biosample

Curated Collection Information
Accession 18451305

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 28.5402N;77.1662E
Original Query Type coordinates
Coordinates (Lat/Lon) 28.54/77.17
Address Jawaharlal Nehru University, Street A, Munirka DDA Flats, A Block, Munirka DDA Flats, Vasant Vihar Tehsil, New Delhi, Delhi, 110067, India

ECOSYSTEM
Original Query Homo sapiens,Respiratory specimen
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Respiratory Infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP072287.1
    • Description: Acinetobacter baumannii strain KSK11 plasmid p2KSK11, complete sequence
    • Source: refseq
    • Created at NCBI: April 6, 2021

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 18452659
  • GEOGRAPHICAL INFORMATION
    • Original Query: 28.5402N;77.1662E
    • Original Query Type: coordinates
    • Address: Jawaharlal Nehru University, Street A, Munirka DDA Flats, A Block, Munirka DDA Flats, Vasant Vihar Tehsil, New Delhi, Delhi, 110067, India
    • Coordinates (Lat/Lon): 28.54/77.17
  • ECOSYSTEM
    • Original Query: Homo sapiens,Respiratory specimen
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Respiratory Infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
      • Respiratory system disease (DOID:1579 )
        • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2