Plasmid NZ_CP070901.1

Sequence

Nucleotide Information

Accession NZ_CP070901.1
Description Klebsiella pneumoniae strain JNQH116 plasmid pJNQH116-3, complete sequence
Source refseq
Topology circular
Length 21383 bp
GC Content 0.52 %
Created at NCBI March 3, 2021



Assembly

Genome Data Information

Accession GCF_017084505.1
Assembly Coverage 98


Biosample

Curated Collection Information
Accession 17976248

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.66N;116.99E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.66/116.99
Address 市中区源福米线店(小青岛米线), 40, Xiaoweier Road, 睦和苑社区, Daguanyuan, Shizhong District, Jinan, Shandong, 250000, China

ECOSYSTEM
Original Query Homo sapiens,cerebrospinal fluid
Classification host_associated,nervous_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query meningitis
DOID/SYMP
  • Meningitis (DOID:9471 )
    • A central nervous system disease that is characterized by an inflammation of the pia-arachnoid meninges. It can be caused by growth of bacteria, fungi, or parasites within the subarachnoid space or by the growth of bacteria or viruses within the meningeal or ependymal cells.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP070901.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore