Plasmid NZ_CP070183.1

Sequence

Nucleotide Information

Accession NZ_CP070183.1
Description Klebsiella pneumoniae strain FDAARGOS_1330 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 5214 bp
GC Content 0.50 %
Created at NCBI Feb. 23, 2021



Assembly

Genome Data Information

Accession GCF_016903515.1
Assembly Coverage 635.94


Biosample

Curated Collection Information
Accession 16357472

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,WA
Original Query Type name
Coordinates (Lat/Lon) 47.29/-120.21
Address USA,WA

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGDNA cytosine methyltransferasecopy
PGAGhypothetical proteincopy
PGAGreplication initiation proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
MOB-typerrep_cluster_2335copy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019986_00002MOBP35905113plus10010001014
oriTCP001388MOBP30003174plus93.7851005.6599999999999995e-68263
repliconKU302809_00001rep_cluster_233525293015minus93.238800715
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2