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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP069664.1
Sequence
Nucleotide Information
Accession
NZ_CP069664.1
Description
Escherichia coli O89m:H10 strain MIN12 plasmid pMUB-MIN12-6, complete sequence
Source
refseq
Topology
circular
Length
3897 bp
GC Content
0.52 %
Created at NCBI
March 26, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (2810405)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_017570605.1
Assembly Coverage
484
Biosample
Curated Collection Information
Accession
17831485
PLASMID INFORMATION
Genotype
ST-10
GEOGRAPHICAL INFORMATION
Original Query
53.12523570N;23.15905989E
Original Query Type
coordinates
Coordinates (Lat/Lon)
53.13/23.16
Address
Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland
ECOSYSTEM
Original Query
Homo sapiens
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP069665.1
NZ_CP069663.1
NZ_CP069662.1
NZ_CP069661.1
NZ_CP069660.1
NZ_CP069659.1
NZ_CP069658.1
Similar Plasmids
based on Mash distance
CP093125.1
See Comparison
NZ_CP092262.1
See Comparison
NZ_CP092262.1
See Comparison
CP098987.1
See Comparison
CP093125.1
See Comparison
CP093125.1
See Comparison
CP098987.1
See Comparison
CP093125.1
See Comparison
NZ_CP092262.1
See Comparison
CP098987.1
See Comparison
CP098987.1
See Comparison
CP098987.1
See Comparison
CP093125.1
See Comparison
CP093125.1
See Comparison
NZ_CP092262.1
See Comparison
NZ_CP092262.1
See Comparison
CP098987.1
See Comparison
NZ_CP092262.1
See Comparison
NZ_CP069664.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore