Plasmid NZ_CP069208.1

Sequence

Nucleotide Information

Accession NZ_CP069208.1
Description Klebsiella pneumoniae strain SP968 plasmid pSP968_4
Source refseq
Topology linear
Length 5409 bp
GC Content 0.52 %
Created at NCBI March 30, 2022



Assembly

Genome Data Information

Accession GCF_022701055.1
Assembly Coverage 68.2


Biosample

Curated Collection Information
Accession 16178551

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,endotracheal aspirate
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query respiratory infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
  • Respiratory system disease (DOID:1579 )
    • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP069208.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore