Plasmid NZ_CP068939.1

Sequence

Nucleotide Information

Accession NZ_CP068939.1
Description Escherichia coli strain RIVM_C028916 plasmid pRIVM_C028916_3, complete sequence
Source refseq
Topology circular
Length 50115 bp
GC Content 0.51 %
Created at NCBI Feb. 3, 2021



Biosample

Curated Collection Information
Accession 17304747

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Homo sapiens,Plasmid
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP144731.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068838.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_CP068337.1 See Comparison
NZ_OW970482.1 See Comparison
NZ_CP068295.1 See Comparison
NZ_CP068338.1 See Comparison
NZ_OW970518.1 See Comparison
OW968427.1 See Comparison
OW969832.1 See Comparison
OW848813.1 See Comparison
OW849309.1 See Comparison
NZ_CP018694.1 See Comparison
NZ_CP018443.1 See Comparison
NZ_CP144731.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068838.1 See Comparison
NZ_CP068337.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_CP068295.1 See Comparison
NZ_CP068338.1 See Comparison
OW969832.1 See Comparison
NZ_OW970482.1 See Comparison
NZ_OW970518.1 See Comparison
NZ_CP144731.1 See Comparison
OW968427.1 See Comparison
OW848813.1 See Comparison
OW849309.1 See Comparison
NZ_CP018694.1 See Comparison
NZ_CP018443.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068939.1 See Comparison
NZ_CP068838.1 See Comparison
NZ_CP068337.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068295.1 See Comparison
NZ_CP068338.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_OW970518.1 See Comparison
OW969832.1 See Comparison
NZ_OW970482.1 See Comparison
OW968427.1 See Comparison
OW848813.1 See Comparison
NZ_CP144731.1 See Comparison
NZ_CP018694.1 See Comparison
NZ_CP018443.1 See Comparison
OW849309.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068838.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_CP068337.1 See Comparison
NZ_CP068295.1 See Comparison
NZ_CP068338.1 See Comparison
NZ_OW970482.1 See Comparison
NZ_OW970518.1 See Comparison
OW969832.1 See Comparison
OW848813.1 See Comparison
OW849309.1 See Comparison
OW968427.1 See Comparison
NZ_CP018694.1 See Comparison
NZ_CP018443.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_CP068838.1 See Comparison
NZ_CP144731.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_CP068295.1 See Comparison
NZ_CP068337.1 See Comparison
OW969832.1 See Comparison
NZ_CP068338.1 See Comparison
NZ_OW970482.1 See Comparison
NZ_OW970518.1 See Comparison
OW848813.1 See Comparison
OW968427.1 See Comparison
NZ_CP068303.1 See Comparison
NZ_CP018694.1 See Comparison
NZ_CP018443.1 See Comparison
NZ_CP068838.1 See Comparison
OW849309.1 See Comparison
NZ_CP144731.1 See Comparison
NZ_LN864820.1 See Comparison
NZ_CP068893.1 See Comparison
NZ_CP068912.1 See Comparison
NZ_CP068943.1 See Comparison
NZ_CP068337.1 See Comparison
NZ_CP068338.1 See Comparison
NZ_CP068295.1 See Comparison
OW848813.1 See Comparison
OW969832.1 See Comparison
NZ_OW970482.1 See Comparison
NZ_OW970518.1 See Comparison
OW968427.1 See Comparison
OW849309.1 See Comparison
NZ_CP018443.1 See Comparison
NZ_CP018694.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore