Plasmid NZ_CP068575.1

Sequence

Nucleotide Information

Accession NZ_CP068575.1
Description Klebsiella pneumoniae strain IR1251 plasmid pKPC2-IR1251, complete sequence
Source refseq
Topology circular
Length 86878 bp
GC Content 0.53 %
Created at NCBI March 13, 2021



Assembly

Genome Data Information

Accession GCF_017310565.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 17271112

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Beijing
Original Query Type name
Coordinates (Lat/Lon) 39.91/116.39
Address China,Beijing

ECOSYSTEM
Original Query whole organism,sputum
Classification host_associated,respiratory_system
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP068575.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-2copy
amrfinderplusblaTEM-1copy
PGAGtraWcopy
PGAGhypothetical proteincopy
PGAGtraUcopy
PGAGtrbCcopy
PGAGtraNcopy
PGAGconjugal transfer protein TrbEcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 121 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000210__KF623109_00045IncU3086431424plus10010001037
replicon000759__NC_013950_00034rep_cluster_14184840749282minus10010001618
relaxaseCP035180_00077MOBF1526216017plus93.651980378
relaxaseNC_021231_00058MOBF1602921287plus98.00310003357
mate-pair-formationNC_022609_00081MPF_F5031489plus91.8181000614
mate-pair-formationNC_019389_00080MPF_F15052140plus97.6421001.83e-136428
mate-pair-formationNC_021654_00016MPF_F21934154plus98.3189801234
mate-pair-formationNC_019165_00034MPF_F70488403plus96.239990806
mate-pair-formationNC_019155_00032MPF_F840611249plus96.4149901758
mate-pair-formationNC_021502_00150MPF_T1371716026plus98.44210001444
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2