Plasmid NZ_CP068340.1

Sequence

Nucleotide Information

Accession NZ_CP068340.1
Description Escherichia coli strain RIVM_C011701 plasmid pRIVM_C011701_1, complete sequence
Source refseq
Topology circular
Length 50916 bp
GC Content 0.46 %
Created at NCBI Jan. 26, 2021



Biosample

Curated Collection Information
Accession 17304581

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Homo sapiens,Plasmid
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP068938.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_AP018837.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP068938.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_AP018837.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP068938.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_AP018837.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP068938.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_AP018837.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP068938.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_AP018837.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP068904.1 See Comparison
NZ_CP068938.1 See Comparison
NZ_CP068910.1 See Comparison
NZ_CP068881.1 See Comparison
NZ_CP068936.1 See Comparison
NZ_MG570092.1 See Comparison
NZ_CP068328.1 See Comparison
NZ_CP068340.1 See Comparison
NZ_CP104800.1 See Comparison
NZ_MN227183.1 See Comparison
NZ_CP103490.1 See Comparison
NZ_CP095779.1 See Comparison
NZ_CP086533.1 See Comparison
NZ_CP043335.1 See Comparison
NZ_CP040399.1 See Comparison
NZ_CP026727.1 See Comparison
NZ_CP135490.1 See Comparison
NZ_OQ803525.1 See Comparison
NZ_CP131963.1 See Comparison
NZ_CP110780.1 See Comparison
NZ_CP142408.1 See Comparison
NZ_CP141549.1 See Comparison
NZ_MK412919.1 See Comparison
NZ_MK412918.1 See Comparison
NZ_MK412916.1 See Comparison
NZ_MG893567.1 See Comparison
NZ_KX894452.1 See Comparison
NZ_KP400525.1 See Comparison
NZ_KT005457.1 See Comparison
NZ_AP018831.1 See Comparison
NZ_CP048009.1 See Comparison
NZ_CP086545.1 See Comparison
NZ_CP081309.1 See Comparison
NZ_CP080367.1 See Comparison
NZ_CP076319.1 See Comparison
NZ_CP034284.1 See Comparison
NZ_CP024806.1 See Comparison
NZ_CP114998.1 See Comparison
NZ_CP114988.1 See Comparison
NZ_CP115002.1 See Comparison
NZ_CP114982.1 See Comparison
NZ_CP092280.1 See Comparison
NZ_CP139031.1 See Comparison
NZ_CP141544.1 See Comparison
NZ_MK412917.1 See Comparison
NZ_KX523903.1 See Comparison
NZ_CP053726.1 See Comparison
NZ_AP018837.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore