Plasmid NZ_CP067427.1

Sequence

Nucleotide Information

Accession NZ_CP067427.1
Description Escherichia coli O22:H8 strain 154 plasmid p3, complete sequence
Source refseq
Topology circular
Length 3596 bp
GC Content 0.43 %
Created at NCBI May 25, 2022



Assembly

Genome Data Information

Accession GCF_023518355.1
Assembly Coverage 130


Biosample

Curated Collection Information
Accession 17217524

PLASMID INFORMATION
Genotype stx1-stx2d
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 35.45S;58.75W
Original Query Type coordinates
Coordinates (Lat/Lon) -35.45/-58.75
Address Partido de Monte, Buenos Aires, Argentina

ECOSYSTEM
Original Query Rectal swab of live bovine cattle
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore